PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG255700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 129aa    MW: 14016.4 Da    PI: 11.8518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG255700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.6e-05591081155
                          HHHHHHHHHHHHHHCTSCC.C.........TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPk.as......kapskKlsKaeiLekAveYIksLq 55 
                          +R++ i+ ++e Lr+l+P  a+      + ++++l+  e L +A  YI  Lq
  Pavir.5KG255700.1.p  59 KRVAAIRRKMEALRRLVPAaAPcggeerRVDDGRLE--ELLLHAAGYILRLQ 108
                          79*****************55598888877888888..88999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-551121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-459121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAAHASCDVA AGAATPTGAA SRRVGLRRPS RTTLKKKARK LMRKAGGGKR PRPSLSRTKR  60
VAAIRRKMEA LRRLVPAAAP CGGEERRVDD GRLEELLLHA AGYILRLQMQ VRVMQVMVHA  120
LNDDDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14852KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701703.11e-40PREDICTED: uncharacterized protein LOC105914476
TrEMBLK3XN771e-40K3XN77_SETIT; Uncharacterized protein
STRINGSi003350m3e-40(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126